A lot has happened and I will have a lot of backfilling to do in this post and others to come.
I have the frame and engine assembled and the engine is on the bike. I decided to try to get the bike together as much as possible before hanging the engine. I am awaiting hand controls, as mine were disassembled and some important internal parts were lost by my helper. I decided to get controls for a CB175, which are more available, but look to have everything I need. I am hoping the throttle control works the same way or I may have to Frankenstein it together, though I think I can actually use the start switch and body of the CB160 on the right and the light and horn switch from the CB175 on the left. I have not drilled my new set of handlebars yet, awaiting the -very slow to come- controls. Well they are all of 350 miles from here, so no wonder it is taking so long!

Without engine. Wanted to see how it was looking.
By the way, yes I am doing this in the house. This is my old house that is vacant and an old rug and no fluids have been installed as of yet. That is to come, but outside or in the garage!!
Issues:
Rear wheel
I had a little trouble figuring out where the strut that stabilizes/fixes the position of the rear wheel hub attaches (driver's side). I hooked up onto one that looked right from the pictures, but then the kickstand hit it. It took a while to figure out that it is up under that area and it installs into the bracket, in-between the two leafs. If you don't install it correct like I did, you will compress it and then you will have a lot of trouble spreading the leafs to reinstall it correctly. I will try to post a picture.
I still have to adjust the rear brakes. I need to install the chain first. I also had to guess on a spring size for the brake light switch at the rear brake pedal arm. Also, the arm seems high and too far in, so I am thinking it is bent from my son trying to remove it for sandblast and paint. I will try to find online pictures to confirm.
Gas tank
I had to cut the reserve fuel line nipple and eventually cut it all the way off and just installed a new brass fitting with nipple. I will get pictures. Though I got it installed perfectly, it still was not air tight, so I installed with two part epoxy and it worked very nicely.
Wiring
Exactly how the wiring was routed is also a mystery, but most everything fell into place by looking for frame attach points and hooking up connections. I did see that the starter cable has an attach point by the drive sprocket and also comes up from between the engine and starter. I will reroute that next. I also need to redo the wiring bundle coming from mid engine so it routes better.
Coil/Spark Plug Wires/Muffler
The coil I got came without attachment or hookup hardware, so I made it myself. Picture to follow. I would recommend against using JC Whitney as a part source. Every last thing I bought through them had issues to overcome, from the coil without hookup hardware or instructions, to twin spark plug cable sets that came with one wire (customer service at first agreed it should be two and then never shipped although they said they would, and now two weeks later they now say it is correct as shipped, even though the picture shows two as does all of the description and title). Finally the muffler, which was supposed to come with sleeves to hook it to stock downpipes, but which does not come with correct sizes, even though I was assured they would. I ended up going to Autozone and getting a converter, which they had in stock. I used one of the supplied sleeves with this and it installed pretty tight. I will need to confirm it stays tight with no blowby after running for a week or two. I will take pictures of this too.

Coil installation with padded clamps. Installs onto the coil studs and tightly between the frame rails.
Headlight/Speedometer/Cables
I had to epoxy repair my headlight, as one attachment tab had broken free. I also had a bunch of hardware to buy to replace that which was lost, including the tension spring for adjustment. I also used tie rod grommets for the wire and cable grommets needed on headlight housing penetrations. I used an exacto knife to cut a relief down the middle and it worked pretty well. I have since found that Ace Hardware sells grommets the size I need, so I would suggest you do that as it saves money!! My speedometer looks pretty rough behind the glass, but I am going to try to use it since the mileage is correct and low (3,000). If I have issues, then I can buy a replacement. Also I mentioned I bought a replacement speedo cable that was 10 inches longer that normal, so I had a bit of rerouting to do, but it ended up making the installation cleaner. I will post pictures of the routing and the look. I also had similar issues with other cables and came up with new routing. The important thing it that the function is not hindered, and I will have a little playing with it yet to do before I am done adjustments.
Engine
The manual says that you do not have to use ring compressors because the lead in to the cylinders are generous, but four broken rings later and I call bull-poop on that. I had already broken one ring on installation, so I had five leftover, so all is well. I made ring compressors out of thick plastic packaging for sanding discs and then used plastic wire ties to do the actual compressing - three of them, one over each ring, but on the outside of the thick plastic sleeve. It worked like a charm! Of course you can also buy the appropriate size compressor. Also, pay attention to the direction of the large fillet cut in the top of the piston, which is for the intake valve and faces the back of the engine. Other that this, it was pretty straight forward. Also, compress the chain tensioner and tighten before installing head. BTW, my camshaft did not have an "O" inscribed for the TDC mark, but there is a drill hole in its place, which was nice because I put a long dowel through it and it helped me see where absolute centered was, and then I removed before installing the top of the engine. This may be a low model number eccentricity.
Carbs
The carbs install with a tapered spacer, that also serves as a heat reducer. I did not see guidance on whether the thicker end goes inboard or outboard, but it seems to work better to make it inside so that the carbs point back and out from center. I will try to confirm though. I still need to figure out how to hook up the two vacuum ports on aft of engine - one at top, large and one in-between the carbs which is smaller. The larger one looks to go back to frame swing arm or as a drain back there. I assume the small one hooks to carbs somehow. Once I have that figure out, I will post pictures.
Update: The large port is a breather port and the hose routes back to act as a drain for when oil is exhausted out the port (found it in workshop manual you can access here). I see on some pictures that the lower one Y's in with the upper one, but then I see in others that it T's into bowl drains. I am going to assume it is a non issue since it is not talked about in the Haynes, Chiltons or Shop manual or elsewhere. Oh, I also found a place that says the carbs need to toe out (click link here).